STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab39bRAB39B, member RAS oncogene family. (213 aa)    
Predicted Functional Partners:
c9orf72
C9orf72-SMCR8 complex subunit.
    
 0.865
smcr8
SMCR8-C9orf72 complex subunit.
    
 0.854
ENSSFAP00005040481
Smith-Magenis syndrome chromosome region, candidate 8b.
    
 0.854
sqstm1
Sequestosome 1.
    
 0.843
ENSSFAP00005055182
annotation not available
    
 0.841
LOC115380886
Ras-related protein Rab-39B-like.
  
  
 
0.832
ENSSFAP00005002741
Ankyrin repeat and FYVE domain containing 1.
     
 0.752
RAB8A
Ras-related protein Rab-8A.
  
  
 
0.744
rab8a
RAB8A, member RAS oncogene family.
  
  
 
0.744
rab8b
RAB8B, member RAS oncogene family.
  
  
 
0.744
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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