STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115405599Diencephalon/mesencephalon homeobox protein 1-A-like. (389 aa)    
Predicted Functional Partners:
LOC115390154
Serum response factor-like.
    
 0.643
SRF
Serum response factor.
    
 0.643
LHX3
LIM homeobox 3.
   
 0.572
ENSSFAP00005033227
LIM homeobox 4.
   
0.572
ENSSFAP00005033230
annotation not available
   
 0.572
LOC115389976
LIM domain-binding protein 1.
    
 0.559
ldb2
LIM domain binding 2.
    
 0.559
LOC115399031
LIM domain-binding protein 1-like.
    
 0.559
tpk1
Thiamin pyrophosphokinase 1.
    
  0.550
ENSSFAP00005021420
annotation not available
    
  0.520
Your Current Organism:
Salarias fasciatus
NCBI taxonomy Id: 181472
Other names: S. fasciatus, jewelled blenny
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.