Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
T09_1263Uncharacterized protein. (652 aa)    
Predicted Functional Partners:
T09_1848
Phosphofurin acidic cluster sorting protein 2.
    
 
 0.934
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
  
 0.856
T09_12750
Tonsoku-like protein.
   
 0.784
T09_2152
Intraflagellar transport protein-like protein.
    
 0.752
T09_10885
Cyclin-G-associated kinase.
  
 0.719
T09_6243
WD repeat-containing protein 48.
    
 0.700
T09_8474
SAGA-associated factor 29-like protein.
    
 0.677
T09_9288
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.638
T09_6843
Cyclin-dependent kinase 2; Belongs to the protein kinase superfamily.
   
 0.633
cdk4
Cyclin-dependent kinase 4; Belongs to the protein kinase superfamily.
   
 0.633
Your Current Organism:
Trichinella sp. T9
NCBI taxonomy Id: 181606
Other names: T. sp. T9
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