STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T09_9763F-box-like/WD repeat-containing protein TBL1X. (1147 aa)    
Predicted Functional Partners:
T09_11961
Nuclear receptor corepressor 2.
   
 0.995
T09_14554
Histone-lysine N-methyltransferase 2E.
    
 
 0.951
arm-2
Armadillo segment polarity protein.
  
 0.945
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
 0.923
arm
Armadillo segment polarity protein.
  
 0.893
skp1
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
 0.879
T09_5934
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.879
siah1
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates; Belongs to the glycosyl hydrolase 18 family.
    
 0.865
T09_144
Lysine-specific demethylase 6A.
  
 0.841
T09_12368
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.838
Your Current Organism:
Trichinella sp. T9
NCBI taxonomy Id: 181606
Other names: T. sp. T9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.