STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T09_9013CCR4-NOT transcription complex subunit 6. (606 aa)    
Predicted Functional Partners:
T09_6711
CCR4-NOT transcription complex subunit 7.
    
 0.999
rqcd1
Cell differentiation protein RCD1-like protein.
    
 0.998
T09_13808
Uncharacterized protein.
    
 
 0.994
cgh-1
ATP-dependent RNA helicase cgh-1; Belongs to the DEAD box helicase family.
    
 0.993
T09_13486
CCR4-NOT transcription complex subunit 4.
    
 0.992
T09_424
Parafibromin.
   
 
 0.985
T09_10481
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.983
cnot1
CCR4-NOT transcription complex subunit 1.
   
 0.975
cnot1-2
CCR4-NOT transcription complex subunit 1.
   
 0.975
T09_3911
CCR4-NOT transcription complex subunit 2.
    
 0.970
Your Current Organism:
Trichinella sp. T9
NCBI taxonomy Id: 181606
Other names: T. sp. T9
Server load: low (18%) [HD]