STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T09_3531Uncharacterized protein. (222 aa)    
Predicted Functional Partners:
T09_13110
Fanconi anemia group M protein.
    
  0.705
oxt
Xylosyltransferase oxt.
    
  0.559
T09_5817
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
    
  0.552
lin-9
Protein lin-9.
    
  0.529
T09_12352
Replication protein A 32 kDa subunit.
    
  0.499
sas6
Spindle assembly abnormal protein 6-like protein.
    
  0.499
lin-54
Protein lin-54.
    
  0.486
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
  0.476
T09_13866
Mediator of RNA polymerase II transcription subunit 23.
    
  0.456
T09_11839
Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
  0.446
Your Current Organism:
Trichinella sp. T9
NCBI taxonomy Id: 181606
Other names: T. sp. T9
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