STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T09_1806Calponin-like protein OV9M. (592 aa)    
Predicted Functional Partners:
T09_5960
Uncharacterized protein.
   
 
 0.580
T09_3863
Uncharacterized protein.
   
 0.525
dim-1
Disorganized muscle protein 1.
   
 0.525
unc-89-2
Muscle M-line assembly protein unc-89.
   
 0.514
T09_3733
Low-density lipoprotein receptor-related protein 1B.
    
 0.510
unc-89-3
Muscle M-line assembly protein unc-89.
   
 0.508
T09_10584
Cathepsin G.
    
 0.505
T09_8769
Uncharacterized protein.
    
 0.505
T09_4960
Chymotrypsin-like elastase family member 2A.
    
 0.505
T09_2320
Uncharacterized protein.
    
 0.505
Your Current Organism:
Trichinella sp. T9
NCBI taxonomy Id: 181606
Other names: T. sp. T9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.