STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T09_13965Ubiquitin carboxyl-terminal hydrolase 18. (681 aa)    
Predicted Functional Partners:
T09_14379
Signal transducing adapter molecule 1.
    
 0.925
ubq-1
Polyubiquitin-A.
    
 0.919
T09_3066
Polyubiquitin-B.
    
 0.919
T09_8016
Ubiquitin-60S ribosomal protein L40.
   
 0.917
T09_14840
Receptor protein-tyrosine kinase.
    
 0.908
T09_11506
Metalloendopeptidase.
    
 0.816
T09_2711
Ubiquitin thioesterase OTUB1.
    
 0.808
T09_9553
GATA-binding factor 3.
    
 0.771
T09_9475
PDZ domain-containing protein 4.
    
 0.765
chmp4b
Charged multivesicular body protein 4b.
    
 
 0.751
Your Current Organism:
Trichinella sp. T9
NCBI taxonomy Id: 181606
Other names: T. sp. T9
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.