STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGI41324.1Hydrogenase 4 subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (488 aa)    
Predicted Functional Partners:
OGI41323.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 0.999
OGI41322.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
OGI41326.1
Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
OGI39035.1
NADH-quinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.997
OGI41325.1
Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.991
napF
Ferredoxin-type protein NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
 0.970
A2140_00090
NADH-quinone oxidoreductase subunit N; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.782
OGI41276.1
Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.713
A2140_04215
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.670
A2140_00385
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.591
Your Current Organism:
Muproteobacteria bacterium RBG166213
NCBI taxonomy Id: 1817756
Other names: C. Muproteobacteria bacterium RBG_16_62_13, Candidatus Muproteobacteria bacterium RBG_16_62_13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.