STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGH08579.150S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)    
Predicted Functional Partners:
OGH08580.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OGH08581.1
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
OGH08582.1
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.998
OGH08586.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OGH08624.1
DNA-directed RNA polymerase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
OGH08590.1
50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
OGH08593.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
OGH08595.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
OGH08597.1
50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
OGH08587.1
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.996
Your Current Organism:
Lambdaproteobacteria bacterium RIFOXYD1FULL5627
NCBI taxonomy Id: 1817770
Other names: C. Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27, Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.