STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGH08845.1Type I-E CRISPR-associated protein Cas7/Cse4/CasC; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
OGH08843.1
Type I-E CRISPR-associated protein Cse1/CasA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OGH08846.1
Type I-E CRISPR-associated protein Cas5/CasD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
OGH08842.1
CRISPR-associated helicase Cas3; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.992
OGH08844.1
Type I-E CRISPR-associated protein Cse2/CasB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.989
OGH08875.1
Subtype I-E CRISPR-associated endonuclease Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
OGH08848.1
Type I-E CRISPR-associated endoribonuclease Cas2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
OGH08847.1
Type I-E CRISPR-associated protein Cas6/Cse3/CasE; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.961
OGH06331.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.574
OGH08841.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.413
Your Current Organism:
Lambdaproteobacteria bacterium RIFOXYD1FULL5627
NCBI taxonomy Id: 1817770
Other names: C. Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27, Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.