STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGH07476.1Nucleoid-associated protein, YbaB/EbfC family; Derived by automated computational analysis using gene prediction method: Protein Homology. (117 aa)    
Predicted Functional Partners:
OGH07477.1
Recombination protein RecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.983
OGH07475.1
DNA polymerase III, subunit gamma and tau; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.916
OGH09094.1
Flagellar biosynthetic protein FliR; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.780
OGH07478.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OGH09574.1
Preprotein translocase subunit YajC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.677
secA
Preprotein translocase subunit SecA; Functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not es [...]
  
 
 0.652
OGH08396.1
Signal recognition particle-docking protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.650
OGH08548.1
DNA polymerase III subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.646
OGH09653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.631
OGH08585.1
Preprotein translocase subunit SecY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.608
Your Current Organism:
Lambdaproteobacteria bacterium RIFOXYD1FULL5627
NCBI taxonomy Id: 1817770
Other names: C. Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27, Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27
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