STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGH06462.1Modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)    
Predicted Functional Partners:
OGH09565.1
Endopeptidase La; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.579
A2600_08260
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
     
 0.579
OGH07880.1
Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.574
OGH07881.1
CoA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.574
OGH06377.1
succinate--CoA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.574
OGH06378.1
succinate--CoA ligase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.574
OGH06444.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.552
OGH06443.1
Guanylate kinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.533
OGH06442.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
OGH10064.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.509
Your Current Organism:
Lambdaproteobacteria bacterium RIFOXYD1FULL5627
NCBI taxonomy Id: 1817770
Other names: C. Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27, Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.