STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGH06481.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)    
Predicted Functional Partners:
OGH08557.1
rRNA maturation RNase YbeY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.986
OGH08595.1
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.977
OGH09362.1
tRNA pseudouridine(38-40) synthase TruA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.974
OGH07003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.901
OGH09749.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.877
OGH09103.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
  0.873
OGH08929.1
16S rRNA (cytosine(1402)-N(4))-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.863
OGH08417.1
Ribonuclease PH; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.862
OGH09406.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.857
OGH08389.1
Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.857
Your Current Organism:
Lambdaproteobacteria bacterium RIFOXYD1FULL5627
NCBI taxonomy Id: 1817770
Other names: C. Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27, Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.