STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGH08311.1DNA (cytosine-5-)-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)    
Predicted Functional Partners:
OGH08307.1
dTDP-4-dehydrorhamnose reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.782
OGH08902.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.656
OGH09939.1
Methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.634
OGH08270.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.617
OGH07281.1
Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.606
OGH09376.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.600
OGH08226.1
Ribosomal RNA small subunit methyltransferase A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.573
OGH07301.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.568
OGH06794.1
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.568
OGH09690.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.535
Your Current Organism:
Lambdaproteobacteria bacterium RIFOXYD1FULL5627
NCBI taxonomy Id: 1817770
Other names: C. Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27, Candidatus Lambdaproteobacteria bacterium RIFOXYD1_FULL_56_27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.