OGM05405.1 protein (Wallbacteria bacterium GWC24935)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

OGM05405.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (163 aa)

Predicted Functional Partners:

OGM05829.1

0.919

OGM05406.1

0.886

OGM03255.1

0.823

OGM01698.1

0.814

OGM06206.1

0.790

OGM03099.1

0.781

OGM08753.1

0.766

OGM07047.1

0.745

OGM08118.1

0.742

OGM07514.1

0.723

Your Current Organism:

Wallbacteria bacterium GWC24935

NCBI taxonomy Id: 1817813
Other names: C. Wallbacteria bacterium GWC2_49_35, Candidatus Wallbacteria bacterium GWC2_49_35

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OGM01698.1	OGM03255.1	A2008_12415	A2008_10705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.619
OGM01698.1	OGM05405.1	A2008_12415	A2008_02360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.814
OGM01698.1	OGM05406.1	A2008_12415	A2008_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
OGM01698.1	OGM05829.1	A2008_12415	A2008_02440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.961
OGM01698.1	OGM06206.1	A2008_12415	A2008_10505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.480
OGM01698.1	OGM07047.1	A2008_12415	A2008_13235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.949
OGM01698.1	OGM07514.1	A2008_12415	A2008_09215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.802
OGM01698.1	OGM08118.1	A2008_12415	A2008_00715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.995
OGM01698.1	OGM08753.1	A2008_12415	A2008_12475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.970
OGM03099.1	OGM05405.1	A2008_05040	A2008_02360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.781
OGM03099.1	OGM05829.1	A2008_05040	A2008_02440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.713
OGM03099.1	OGM08118.1	A2008_05040	A2008_00715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.849
OGM03099.1	OGM08753.1	A2008_05040	A2008_12475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.468
OGM03255.1	OGM01698.1	A2008_10705	A2008_12415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.619
OGM03255.1	OGM05405.1	A2008_10705	A2008_02360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.823
OGM03255.1	OGM05406.1	A2008_10705	A2008_02365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
OGM03255.1	OGM05829.1	A2008_10705	A2008_02440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.956
OGM03255.1	OGM06206.1	A2008_10705	A2008_10505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.482
OGM03255.1	OGM07047.1	A2008_10705	A2008_13235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.947
OGM03255.1	OGM07514.1	A2008_10705	A2008_09215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.802

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Network Stats

number of nodes:

7

number of edges:

13

average node degree:

3.71

avg. local clustering coefficient:

0.881

expected number of edges:

9

PPI enrichment p-value:

0.114

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 101

1.44

2.83

2.62e-13

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

7 of 50

1.55

2.33

1.76e-07

GO:0019843

rRNA binding

5 of 41

1.49

1.66

4.76e-05

GO:0003723

RNA binding

7 of 104

1.24

1.45

7.03e-06

GO:0003743

Translation initiation factor activity

2 of 5

2.01

0.88

0.0215

GO:0003676

Nucleic acid binding

9 of 324

0.85

0.82

2.68e-05

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

7 of 53

1.53

2.39

4.78e-08

GO:0044391

Ribosomal subunit

2 of 13

1.59

0.81

0.0226

GO:0005622

Intracellular anatomical structure

11 of 951

0.47

0.41

0.00013

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:195

Ribosome, and Translation regulator activity

10 of 78

1.52

2.98

3.09e-12

CL:208

Ribosome

7 of 42

1.63

2.86

3.54e-09

CL:196

Ribosome, and Translation regulator activity

9 of 73

1.5

2.81

2.76e-11

CL:210

Ribosome

6 of 30

1.71

2.81

3.79e-08

CL:199

Ribosome

8 of 60

1.53

2.74

4.97e-10

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

7 of 51

1.54

2.45

3.73e-08

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 45

1.6

2.57

3.75e-08

GOCC:0044391

Ribosomal subunit

3 of 25

1.49

1.03

0.0049

GOCC:0022625

Cytosolic large ribosomal subunit

2 of 12

1.63

0.74

0.0342

GOCC:0005622

Intracellular

11 of 929

0.48

0.41

0.00034

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

7 of 52

1.54

2.37

7.21e-08

KW-0694

RNA-binding

6 of 65

1.37

1.7

5.49e-06

KW-0699

rRNA-binding

4 of 36

1.45

1.33

0.00051

KW-0648

Protein biosynthesis

4 of 42

1.39

1.23

0.00072

KW-0396

Initiation factor

2 of 4

2.11

1.15

0.0066

(more ...)

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