STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGF09483.1threonine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)    
Predicted Functional Partners:
OGF10699.1
50S ribosomal protein L20; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.951
OGF11089.1
Translation initiation factor IF-3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.947
OGF10254.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
OGF11837.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.940
OGF10681.1
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.935
rpsN
30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.932
OGF10884.1
50S ribosomal protein L11; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.925
OGF11820.1
50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.917
A3K15_02240
30S ribosomal protein S19; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.915
OGF10712.1
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.913
Your Current Organism:
Edwardsbacteria bacterium GWE25412
NCBI taxonomy Id: 1817850
Other names: C. Edwardsbacteria bacterium GWE2_54_12, Candidatus Edwardsbacteria bacterium GWE2_54_12
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