STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A3K15_11055Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (573 aa)    
Predicted Functional Partners:
OGF12517.1
isoleucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.998
OGF12419.1
arginine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.990
OGF10936.1
asparagine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.989
OGF09876.1
glutamine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.986
OGF09878.1
glutamate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.986
OGF12478.1
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.985
OGF09712.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.983
OGF11254.1
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.977
OGF12654.1
tRNA dihydrouridine synthase DusB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.899
OGF11679.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.867
Your Current Organism:
Edwardsbacteria bacterium GWE25412
NCBI taxonomy Id: 1817850
Other names: C. Edwardsbacteria bacterium GWE2_54_12, Candidatus Edwardsbacteria bacterium GWE2_54_12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.