STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGF50077.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)    
Predicted Functional Partners:
OGF50076.1
D-lysine 5,6-aminomutase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
OGF50075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.870
OGF45264.1
Glycine cleavage system protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.729
A2231_08300
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.654
A2231_06535
Methylaspartate mutase subunit E; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.560
A2231_03445
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome; Belongs to the methylenetetrahydrofolate reductase family.
  
 
 0.537
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
 0.519
OGF45192.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the formate--tetrahydrofolate ligase family.
    
  0.462
fhs
Formate--tetrahydrofolate ligase; Catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family.
    
  0.462
A2231_08275
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.441
Your Current Organism:
Firestonebacteria bacterium RIFOXYA2FULL408
NCBI taxonomy Id: 1817859
Other names: C. Firestonebacteria bacterium RIFOXYA2_FULL_40_8, Candidatus Firestonebacteria bacterium RIFOXYA2_FULL_40_8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.