STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGF48374.1Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (162 aa)    
Predicted Functional Partners:
rodA
Hypothetical protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
       0.773
OGF48373.1
Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
OGF48375.1
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
       0.773
OGF48376.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.467
OGF48377.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.467
OGF48378.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.467
Your Current Organism:
Firestonebacteria bacterium RIFOXYA2FULL408
NCBI taxonomy Id: 1817859
Other names: C. Firestonebacteria bacterium RIFOXYA2_FULL_40_8, Candidatus Firestonebacteria bacterium RIFOXYA2_FULL_40_8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.