STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A2Z21_05140Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome. (212 aa)    
Predicted Functional Partners:
A2Z21_09505
GTPase Era; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.843
A2Z21_07670
Thioesterase; Metagenomic; derived from metagenome: subsurface metagenome.
 
 0.801
OGF55921.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.795
A2Z21_04930
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.795
OGF53634.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.756
OGF57048.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.712
OGF53170.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.593
OGF54725.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.577
A2Z21_03200
L-threonine 3-dehydrogenase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.555
OGF57740.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.532
Your Current Organism:
Fraserbacteria bacterium RBG16559
NCBI taxonomy Id: 1817864
Other names: C. Fraserbacteria bacterium RBG_16_55_9, Candidatus Fraserbacteria bacterium RBG_16_55_9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.