STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGF53347.1Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (807 aa)    
Predicted Functional Partners:
OGF55591.1
Cadmium-translocating P-type ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
0.979
OGF55596.1
Copper-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.928
OGF56551.1
Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.835
OGF55598.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.775
A2Z21_03700
Addiction module antitoxin; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
    
 0.743
OGF57180.1
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.736
A2Z21_06910
TIGR00299 family protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.719
OGF54592.1
Molybdenum cofactor biosynthesis protein MoeB; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.718
A2Z21_07660
Hypothetical protein; Too many ambiguous residues; incomplete; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.680
A2Z21_04090
Threonine synthase; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.674
Your Current Organism:
Fraserbacteria bacterium RBG16559
NCBI taxonomy Id: 1817864
Other names: C. Fraserbacteria bacterium RBG_16_55_9, Candidatus Fraserbacteria bacterium RBG_16_55_9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.