STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A2Z21_08295Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)    
Predicted Functional Partners:
OGF55341.1
Hydrogenase formation protein HypD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.974
OGF55342.1
Hydrogenase assembly protein HupF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.950
OGF55343.1
Carbamoyltransferase HypF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.949
purL
Hypothetical protein; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the am [...]
     
 0.565
OGF52878.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.547
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
     
 0.504
OGF55774.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.472
OGF55775.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.453
OGF54927.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.425
Your Current Organism:
Fraserbacteria bacterium RBG16559
NCBI taxonomy Id: 1817864
Other names: C. Fraserbacteria bacterium RBG_16_55_9, Candidatus Fraserbacteria bacterium RBG_16_55_9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.