STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGK12414.1Cytidine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
  
 0.867
OGK12394.1
Ribose 5-phosphate isomerase B; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.820
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.798
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
    
 0.793
OGK04777.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.770
OGK12391.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.760
OGK07834.1
dCTP deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.752
OGK12297.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.748
OGK04905.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.716
OGK07759.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.704
Your Current Organism:
Riflebacteria bacterium GWC2508
NCBI taxonomy Id: 1817874
Other names: C. Riflebacteria bacterium GWC2_50_8, Candidatus Riflebacteria bacterium GWC2_50_8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.