STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGK05578.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (691 aa)    
Predicted Functional Partners:
OGK10768.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.712
A2W80_07580
Hypothetical protein; Frameshifted; too many ambiguous residues; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.712
OGK07897.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.660
A2W80_03420
Hypothetical protein; Metagenomic; derived from metagenome: subsurface metagenome.
    
 0.660
OGK08623.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.660
OGK10914.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.660
OGK09625.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.660
OGK11388.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.660
A2W80_17745
Hypothetical protein; Too many ambiguous residues; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.645
OGK05579.1
Uracil permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.435
Your Current Organism:
Riflebacteria bacterium GWC2508
NCBI taxonomy Id: 1817874
Other names: C. Riflebacteria bacterium GWC2_50_8, Candidatus Riflebacteria bacterium GWC2_50_8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.