STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGL52567.1SynChlorMet cassette protein ScmD; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)    
Predicted Functional Partners:
OGL52688.1
SynChlorMet cassette radical SAM/SPASM protein ScmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OGL52566.1
SynChlorMet cassette radical SAM/SPASM protein ScmE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
OGL52689.1
PHP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
OGL52568.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
OGL52565.1
SynChlorMet cassette protein ScmC; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.404
Your Current Organism:
Schekmanbacteria bacterium RIFCSPLOWO212FULL3815
NCBI taxonomy Id: 1817883
Other names: C. Schekmanbacteria bacterium RIFCSPLOWO2_12_FULL_38_15, Candidatus Schekmanbacteria bacterium RIFCSPLOWO2_12_FULL_38_15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.