STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OGJ98321.1LL-diaminopimelate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)    
Predicted Functional Partners:
OGJ96924.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.872
OGJ96653.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.833
OGJ97901.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.806
OGJ97033.1
Methionine adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.796
OGJ95214.1
Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.788
OGJ97902.1
Aspartate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.787
OGJ97251.1
Threonine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.784
OGJ97691.1
Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.784
OGJ96763.1
Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.783
OGJ98319.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
Your Current Organism:
Raymondbacteria bacterium RIFOXYC2FULL5021
NCBI taxonomy Id: 1817889
Other names: C. Raymondbacteria bacterium RIFOXYC2_FULL_50_21, Candidatus Raymondbacteria bacterium RIFOXYC2_FULL_50_21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.