CVT24_000175 protein (Panaeolus cyanescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CVT24_000175

Uncharacterized protein. (526 aa)

Predicted Functional Partners:

CVT24_009437

0.999

CVT24_010029

0.999

CVT24_003789

0.999

CVT24_003309

0.999

CVT24_009045

0.999

CVT24_001353

0.999

CVT24_002191

0.999

CVT24_002139

0.999

CVT24_010626

0.999

CVT24_007818

0.998

Your Current Organism:

Panaeolus cyanescens

NCBI taxonomy Id: 181874
Other names: Copelandia cyanescens, P. cyanescens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT24_000175	CVT24_001353	A0A409VWS9	A0A409YFW8	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
CVT24_000175	CVT24_002139	A0A409VWS9	A0A409YI32	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CVT24_000175	CVT24_002191	A0A409VWS9	A0A409YI06	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT24_000175	CVT24_003309	A0A409VWS9	A0A409Y6L1	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT24_000175	CVT24_003789	A0A409VWS9	A0A409W846	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT24_000175	CVT24_007818	A0A409VWS9	A0A409W4N0	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.998
CVT24_000175	CVT24_009045	A0A409VWS9	A0A409YAJ5	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT24_000175	CVT24_009437	A0A409VWS9	A0A409W3M2	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.999
CVT24_000175	CVT24_010029	A0A409VWS9	A0A409W3Y2	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CVT24_000175	CVT24_010626	A0A409VWS9	A0A409YLW5	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CVT24_001353	CVT24_000175	A0A409YFW8	A0A409VWS9	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
CVT24_001353	CVT24_002139	A0A409YFW8	A0A409YI32	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CVT24_001353	CVT24_002191	A0A409YFW8	A0A409YI06	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
CVT24_001353	CVT24_003309	A0A409YFW8	A0A409Y6L1	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
CVT24_001353	CVT24_003789	A0A409YFW8	A0A409W846	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
CVT24_001353	CVT24_007818	A0A409YFW8	A0A409W4N0	RPOLD domain-containing protein.	RNA_pol_L_2 domain-containing protein.	0.998
CVT24_001353	CVT24_009045	A0A409YFW8	A0A409YAJ5	RPOLD domain-containing protein.	Uncharacterized protein.	0.999
CVT24_001353	CVT24_009437	A0A409YFW8	A0A409W3M2	RPOLD domain-containing protein.	TFIIS-type domain-containing protein.	0.999
CVT24_001353	CVT24_010029	A0A409YFW8	A0A409W3Y2	RPOLD domain-containing protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CVT24_001353	CVT24_010626	A0A409YFW8	A0A409YLW5	RPOLD domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999