CVT24_011909 protein (Panaeolus cyanescens) - STRING interaction network

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white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Coexpression

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[Homology]

Score

CVT24_011909

Uncharacterized protein. (897 aa)

Predicted Functional Partners:

CVT24_002562

0.804

CVT24_005079

0.639

CVT24_002142

0.477

CVT24_011097

0.472

CVT24_004923

0.436

CVT24_012199

0.436

CVT24_013204

0.414

CVT24_001703

0.412

CVT24_012025

0.410

CVT24_003565

0.408

Your Current Organism:

Panaeolus cyanescens

NCBI taxonomy Id: 181874
Other names: Copelandia cyanescens, P. cyanescens

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CVT24_001703	CVT24_011909	A0A409YFL6	A0A409YNP9	Uncharacterized protein.	Uncharacterized protein.	0.412
CVT24_001703	CVT24_013204	A0A409YFL6	A0A409YMU9	Uncharacterized protein.	Uncharacterized protein.	0.999
CVT24_002142	CVT24_002562	A0A409YI09	A0A409YTW9	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Uncharacterized protein.	0.479
CVT24_002142	CVT24_003565	A0A409YI09	A0A409Y7L2	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Ubiquitin-like domain-containing protein.	0.411
CVT24_002142	CVT24_004923	A0A409YI09	A0A409V9K5	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	MPN domain-containing protein.	0.437
CVT24_002142	CVT24_005079	A0A409YI09	A0A409YB06	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Uncharacterized protein.	0.479
CVT24_002142	CVT24_011909	A0A409YI09	A0A409YNP9	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	Uncharacterized protein.	0.477
CVT24_002562	CVT24_002142	A0A409YTW9	A0A409YI09	Uncharacterized protein.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.479
CVT24_002562	CVT24_003565	A0A409YTW9	A0A409Y7L2	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.428
CVT24_002562	CVT24_005079	A0A409YTW9	A0A409YB06	Uncharacterized protein.	Uncharacterized protein.	0.434
CVT24_002562	CVT24_011097	A0A409YTW9	A0A409YG32	Uncharacterized protein.	EGF-like domain-containing protein.	0.505
CVT24_002562	CVT24_011909	A0A409YTW9	A0A409YNP9	Uncharacterized protein.	Uncharacterized protein.	0.804
CVT24_003565	CVT24_002142	A0A409Y7L2	A0A409YI09	Ubiquitin-like domain-containing protein.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.411
CVT24_003565	CVT24_002562	A0A409Y7L2	A0A409YTW9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.428
CVT24_003565	CVT24_004923	A0A409Y7L2	A0A409V9K5	Ubiquitin-like domain-containing protein.	MPN domain-containing protein.	0.966
CVT24_003565	CVT24_011909	A0A409Y7L2	A0A409YNP9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.408
CVT24_003565	CVT24_012025	A0A409Y7L2	A0A409YNH6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.632
CVT24_004923	CVT24_002142	A0A409V9K5	A0A409YI09	MPN domain-containing protein.	14_3_3 domain-containing protein; Belongs to the 14-3-3 family.	0.437
CVT24_004923	CVT24_003565	A0A409V9K5	A0A409Y7L2	MPN domain-containing protein.	Ubiquitin-like domain-containing protein.	0.966
CVT24_004923	CVT24_011909	A0A409V9K5	A0A409YNP9	MPN domain-containing protein.	Uncharacterized protein.	0.436

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Network Stats

number of nodes:

3

number of edges:

2

average node degree:

1.33

avg. local clustering coefficient:

0.667

expected number of edges:

2

PPI enrichment p-value:

0.526

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006431

methionyl-tRNA aminoacylation

2 of 3

3.31

1.18

0.0077

GO:1901838

Positive regulation of transcription of nucleolar large rRNA by RNA polymerase I

2 of 7

2.94

1.03

0.0139

GO:0036120

Cellular response to platelet-derived growth factor stimulus

2 of 8

2.88

1.03

0.0139

GO:0009303

rRNA transcription

2 of 8

2.88

1.03

0.0139

GO:0071364

Cellular response to epidermal growth factor stimulus

2 of 16

2.58

1.02

0.0139

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004825

methionine-tRNA ligase activity

2 of 3

3.31

1.44

0.0026

GO:0004165

delta(3)-delta(2)-enoyl-CoA isomerase activity

2 of 8

2.88

1.23

0.0059

GO:0000062

fatty-acyl-CoA binding

2 of 17

2.55

1.05

0.0120

GO:0016853

Isomerase activity

3 of 183

1.7

0.95

0.0120

GO:0033218

Amide binding

3 of 290

1.5

0.76

0.0265

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030992

Intraciliary transport particle B

2 of 16

2.58

1.04

0.0129

GO:0017101

aminoacyl-tRNA synthetase multienzyme complex

2 of 13

2.67

1.04

0.0129

GO:0005782

Peroxisomal matrix

2 of 20

2.48

1.03

0.0129

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:28161

Thiolase, C-terminal domain, and delta(3)-delta(2)-enoyl-CoA isomerase activity

2 of 6

3.01

1.04

0.0135

CL:19446

aminoacyl-tRNA synthetase multienzyme complex

2 of 6

3.01

1.04

0.0135

CL:1835

Intraciliary transport particle B

2 of 15

2.61

1.03

0.0135

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00450

Selenocompound metabolism

2 of 29

2.32

1.1

0.0092

map00970

Aminoacyl-tRNA biosynthesis

2 of 83

1.87

0.76

0.0350

map00071

Fatty acid degradation

2 of 86

1.85

0.76

0.0350

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-390247

Beta-oxidation of very long chain fatty acids

2 of 14

2.64

0.95

0.0188

MAP-2408522

Selenoamino acid metabolism

2 of 29

2.32

0.79

0.0363

MAP-379716

Cytosolic tRNA aminoacylation

2 of 34

2.25

0.78

0.0363

MAP-8978868

Fatty acid metabolism

3 of 247

1.57

0.71

0.0363

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030992

Intraciliary transport particle B

2 of 11

2.74

1.06

0.0118

GOCC:0017101

aminoacyl-tRNA synthetase multienzyme complex

2 of 14

2.64

1.06

0.0118

GOCC:0005782

Peroxisomal matrix

2 of 21

2.46

1.05

0.0118

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR023458

Methionine-tRNA ligase, type 1

2 of 2

3.48

1.32

0.0042

IPR014758

Methionyl-tRNA synthetase

2 of 3

3.31

1.32

0.0042

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