STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_002104535_02446Unannotated protein. (245 aa)    
Predicted Functional Partners:
GCA_002104535_02447
Unannotated protein.
 
 0.998
GCA_002104535_02448
Unannotated protein.
 
 0.996
GCA_002104535_00394
Unannotated protein.
   
 
  0.915
GCA_002104535_02380
Unannotated protein.
  
  
  0.891
GCA_002104535_01025
Unannotated protein.
   
 
  0.876
GCA_002104535_02445
Unannotated protein.
       0.748
GCA_002104535_00725
Unannotated protein.
   
 
  0.646
GCA_002104535_03230
Unannotated protein.
 
  
 0.627
GCA_002104535_02455
Unannotated protein.
  
 
  0.532
GCA_002104535_00923
Unannotated protein.
   
    0.518
Your Current Organism:
Colwellia sediminilitoris
NCBI taxonomy Id: 1820336
Other names: C. sediminilitoris, Colwellia sediminilitoris Park et al. 2016, Colwellia sp. YSM-23, KCTC 52213, NBRC 111994, strain YSM-23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.