STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCW_00810Copper efflux system membrane protein CusA; COG3696 Putative silver efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1032 aa)    
Predicted Functional Partners:
HCW_00805
Cation efflux system protein; COG0845 Membrane-fusion protein.
 
 
 0.978
HCW_00800
COG1538 Outer membrane protein.
  
  
 0.899
HCW_00795
Hypothetical protein.
     
 0.840
HCW_00815
Putative transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.563
HCW_05285
Cobalt-zinc-cadmium resistance protein, CzcB family; COG0845 Membrane-fusion protein.
 
 
 0.545
fumC
Fumarate hydratase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.543
HCW_00780
Hypothetical protein.
       0.496
HCW_00785
PemK-like protein; COG2337 Growth inhibitor.
       0.496
HCW_05475
Membrane fusion protein of the hefABC efflux system HefB; COG0845 Membrane-fusion protein.
 
 
 0.464
HCW_00820
COG0642 Signal transduction histidine kinase.
     
 0.459
Your Current Organism:
Helicobacter cetorum MIT007128
NCBI taxonomy Id: 182217
Other names: H. cetorum MIT 00-7128, Helicobacter cetorum MIT 00-7128, Helicobacter cetorum str. MIT 00-7128, Helicobacter cetorum strain MIT 00-7128, Helicobacter sp. MIT 00-7128
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.