Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
HCW_01140 | HCW_01230 | COG0281 Malic enzyme. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.577 |
HCW_01140 | HCW_02420 | COG0281 Malic enzyme. | Proline/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.810 |
HCW_01140 | HCW_07430 | COG0281 Malic enzyme. | Phosphotransacetylase; COG0857 BioD-like N-terminal domain of phosphotransacetylase. | 0.953 |
HCW_01140 | HCW_08650 | COG0281 Malic enzyme. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.577 |
HCW_01225 | HCW_01230 | iron(III) dicitrate transport protein FecA; COG4772 Outer membrane receptor for Fe3+-dicitrate. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.449 |
HCW_01230 | HCW_01140 | COG1064 Zn-dependent alcohol dehydrogenases. | COG0281 Malic enzyme. | 0.577 |
HCW_01230 | HCW_01225 | COG1064 Zn-dependent alcohol dehydrogenases. | iron(III) dicitrate transport protein FecA; COG4772 Outer membrane receptor for Fe3+-dicitrate. | 0.449 |
HCW_01230 | HCW_01235 | COG1064 Zn-dependent alcohol dehydrogenases. | Hypothetical protein; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. | 0.445 |
HCW_01230 | HCW_01240 | COG1064 Zn-dependent alcohol dehydrogenases. | Hypothetical protein. | 0.445 |
HCW_01230 | HCW_02420 | COG1064 Zn-dependent alcohol dehydrogenases. | Proline/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | 0.485 |
HCW_01230 | HCW_07430 | COG1064 Zn-dependent alcohol dehydrogenases. | Phosphotransacetylase; COG0857 BioD-like N-terminal domain of phosphotransacetylase. | 0.407 |
HCW_01230 | HCW_08650 | COG1064 Zn-dependent alcohol dehydrogenases. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.902 |
HCW_01235 | HCW_01230 | Hypothetical protein; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.445 |
HCW_01235 | HCW_01240 | Hypothetical protein; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. | Hypothetical protein. | 0.773 |
HCW_01240 | HCW_01230 | Hypothetical protein. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.445 |
HCW_01240 | HCW_01235 | Hypothetical protein. | Hypothetical protein; COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases. | 0.773 |
HCW_02420 | HCW_01140 | Proline/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | COG0281 Malic enzyme. | 0.810 |
HCW_02420 | HCW_01230 | Proline/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.485 |
HCW_02420 | HCW_07430 | Proline/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | Phosphotransacetylase; COG0857 BioD-like N-terminal domain of phosphotransacetylase. | 0.583 |
HCW_02420 | HCW_08650 | Proline/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family. | COG1064 Zn-dependent alcohol dehydrogenases. | 0.485 |
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