STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCW_06560Hypothetical protein. (201 aa)    
Predicted Functional Partners:
HCW_06570
NAD-dependent formate dehydrogenase subunit alpha; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing.
  
 
 0.850
HCW_06565
Hypothetical protein.
  
    0.848
HCW_06555
Iron-sulfur cluster-binding domain-containing protein; COG1145 Ferredoxin.
       0.836
HCW_06575
NAD-dependent formate dehydrogenase subunit alpha; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.770
HCW_06590
COG2864 Cytochrome b subunit of formate dehydrogenase.
  
  
 0.685
HCW_06585
Formate dehydrogenase-O, iron-sulfur subunit; COG0437 Fe-S-cluster-containing hydrogenase components 1.
  
  
 0.661
HCW_06545
Osmoprotection ATP-binding protein; COG1125 ABC-type proline/glycine betaine transport systems, ATPase components.
       0.565
HCW_06550
Osmoprotection protein; COG1174 ABC-type proline/glycine betaine transport systems, permease component.
       0.565
HCW_06580
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
       0.476
napG
Quinol dehydrogenase periplasmic component; COG1145 Ferredoxin.
  
  
 0.434
Your Current Organism:
Helicobacter cetorum MIT007128
NCBI taxonomy Id: 182217
Other names: H. cetorum MIT 00-7128, Helicobacter cetorum MIT 00-7128, Helicobacter cetorum str. MIT 00-7128, Helicobacter cetorum strain MIT 00-7128, Helicobacter sp. MIT 00-7128
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.