STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCW_07235Hypothetical protein. (281 aa)    
Predicted Functional Partners:
HCW_03615
Flagellar motor switch protein FliY; COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation.
   
   0.915
HCW_06730
COG1629 Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.908
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.674
HCW_06850
Viral A-type inclusion protein repeat protein.
  
 
 0.627
HCW_00165
COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.604
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
       0.436
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.414
HCW_01515
COG0845 Membrane-fusion protein.
  
  
 0.412
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
  
 0.401
Your Current Organism:
Helicobacter cetorum MIT007128
NCBI taxonomy Id: 182217
Other names: H. cetorum MIT 00-7128, Helicobacter cetorum MIT 00-7128, Helicobacter cetorum str. MIT 00-7128, Helicobacter cetorum strain MIT 00-7128, Helicobacter sp. MIT 00-7128
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.