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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCW_08030Hypothetical protein; COG1401 GTPase subunit of restriction endonuclease. (542 aa)    
Predicted Functional Partners:
HCW_08035
Hypothetical protein.
       0.773
HCW_08025
COG0270 Site-specific DNA methylase.
 
   
 0.706
HCW_08040
Hypothetical protein.
       0.620
HCW_08015
COG0286 Type I restriction-modification system methyltransferase subunit.
       0.497
HCW_08020
Hypothetical protein.
       0.497
HCW_04000
Haeiv restriction/modification system; COG0286 Type I restriction-modification system methyltransferase subunit.
  
  
 0.460
HCW_02260
COG0270 Site-specific DNA methylase.
 
   
 0.446
Your Current Organism:
Helicobacter cetorum MIT007128
NCBI taxonomy Id: 182217
Other names: H. cetorum MIT 00-7128, Helicobacter cetorum MIT 00-7128, Helicobacter cetorum str. MIT 00-7128, Helicobacter cetorum strain MIT 00-7128, Helicobacter sp. MIT 00-7128
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.