Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HCW_08085COG2948 Type IV secretory pathway, VirB10 components. (400 aa)    
Predicted Functional Partners:
HCW_08080
COG3504 Type IV secretory pathway, VirB9 components.
 
 
 0.986
HCW_08065
COG3451 Type IV secretory pathway, VirB4 components.
 
 
 0.967
HCW_00175
DNA transformation compentancy; COG3504 Type IV secretory pathway, VirB9 components.
 
 
 0.947
HCW_04385
COG3504 Type IV secretory pathway, VirB9 components.
 
 
 0.942
HCW_04400
VirB4-like protein; COG3451 Type IV secretory pathway, VirB4 components.
 
 
 0.939
HCW_08115
VirD4 coupling protein; COG3505 Type IV secretory pathway, VirD4 components.
 
 
 
 0.936
HCW_08105
COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
  
 0.935
HCW_08075
COG3736 Type IV secretory pathway, component VirB8.
  
 
 0.931
HCW_01875
virB11 protein; COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
  
 0.804
HCW_04370
COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
 
  
 0.803
Your Current Organism:
Helicobacter cetorum MIT007128
NCBI taxonomy Id: 182217
Other names: H. cetorum MIT 00-7128, Helicobacter cetorum MIT 00-7128, Helicobacter cetorum str. MIT 00-7128, Helicobacter cetorum strain MIT 00-7128, Helicobacter sp. MIT 00-7128
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