STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OAP85542.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (356 aa)    
Predicted Functional Partners:
OAP85543.1
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.754
sigA
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.694
OAP87082.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.537
OAP86410.1
HxlR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.535
lexA
Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.507
OAP85629.1
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
OAP85418.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.472
OAP85437.1
Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.
     
 0.453
whiA
DNA-binding protein WhiA; Involved in cell division and chromosome segregation.
      
 0.407
Your Current Organism:
Actinomycetaceae bacterium BA112
NCBI taxonomy Id: 1823756
Other names: A. bacterium BA112
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