Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Cph2 | Gmr_2 | SAMN05444423_101235 | SAMN05444423_104226 | Diguanylate cyclase/phosphodiesterase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.703 |
Cph2 | Gmr_5 | SAMN05444423_101235 | SAMN05444423_1011274 | Diguanylate cyclase/phosphodiesterase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.614 |
Cph2 | SFL88211.1 | SAMN05444423_101235 | SAMN05444423_1011272 | Diguanylate cyclase/phosphodiesterase. | Hypothetical protein. | 0.798 |
Cph2 | YdeH | SAMN05444423_101235 | SAMN05444423_105192 | Diguanylate cyclase/phosphodiesterase. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.634 |
Gmr_2 | Cph2 | SAMN05444423_104226 | SAMN05444423_101235 | Diguanylate cyclase (GGDEF) domain-containing protein. | Diguanylate cyclase/phosphodiesterase. | 0.703 |
Gmr_2 | SFL88211.1 | SAMN05444423_104226 | SAMN05444423_1011272 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.491 |
Gmr_5 | Cph2 | SAMN05444423_1011274 | SAMN05444423_101235 | Diguanylate cyclase (GGDEF) domain-containing protein. | Diguanylate cyclase/phosphodiesterase. | 0.614 |
Gmr_5 | SFL88149.1 | SAMN05444423_1011274 | SAMN05444423_1011270 | Diguanylate cyclase (GGDEF) domain-containing protein. | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain. | 0.436 |
Gmr_5 | SFL88178.1 | SAMN05444423_1011274 | SAMN05444423_1011271 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.428 |
Gmr_5 | SFL88211.1 | SAMN05444423_1011274 | SAMN05444423_1011272 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.961 |
Gmr_5 | SFL88240.1 | SAMN05444423_1011274 | SAMN05444423_1011273 | Diguanylate cyclase (GGDEF) domain-containing protein. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.815 |
Gmr_5 | SFL88293.1 | SAMN05444423_1011274 | SAMN05444423_1011275 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.768 |
Gmr_5 | TetR_10 | SAMN05444423_1011274 | SAMN05444423_1011162 | Diguanylate cyclase (GGDEF) domain-containing protein. | Transcriptional regulator, TetR family. | 0.541 |
Gmr_5 | TetR_9 | SAMN05444423_1011274 | SAMN05444423_1011488 | Diguanylate cyclase (GGDEF) domain-containing protein. | Transcriptional regulator, TetR family. | 0.541 |
SFL88149.1 | Gmr_5 | SAMN05444423_1011270 | SAMN05444423_1011274 | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.436 |
SFL88149.1 | SFL88178.1 | SAMN05444423_1011270 | SAMN05444423_1011271 | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain. | Hypothetical protein. | 0.799 |
SFL88149.1 | SFL88211.1 | SAMN05444423_1011270 | SAMN05444423_1011272 | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain. | Hypothetical protein. | 0.465 |
SFL88149.1 | SFL88240.1 | SAMN05444423_1011270 | SAMN05444423_1011273 | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.449 |
SFL88149.1 | SFL88293.1 | SAMN05444423_1011270 | SAMN05444423_1011275 | Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain. | Hypothetical protein. | 0.407 |
SFL88178.1 | Gmr_5 | SAMN05444423_1011271 | SAMN05444423_1011274 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.428 |
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