Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LytB | LytC_1 | SAMN05444423_101197 | SAMN05444423_101343 | SpoIID/LytB domain protein. | N-acetylmuramoyl-L-alanine amidase. | 0.646 |
LytB | LytC_2 | SAMN05444423_101197 | SAMN05444423_107188 | SpoIID/LytB domain protein. | N-acetylmuramoyl-L-alanine amidase. | 0.421 |
LytC_1 | LytB | SAMN05444423_101343 | SAMN05444423_101197 | N-acetylmuramoyl-L-alanine amidase. | SpoIID/LytB domain protein. | 0.646 |
LytC_1 | LytC_2 | SAMN05444423_101343 | SAMN05444423_107188 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.947 |
LytC_1 | RipA_1 | SAMN05444423_101343 | SAMN05444423_10875 | N-acetylmuramoyl-L-alanine amidase. | Cell wall-associated hydrolase, NlpC family. | 0.618 |
LytC_1 | SFL70530.1 | SAMN05444423_101343 | SAMN05444423_101604 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.697 |
LytC_1 | SFL86356.1 | SAMN05444423_101343 | SAMN05444423_1011199 | N-acetylmuramoyl-L-alanine amidase. | Chorismate mutase. | 0.708 |
LytC_1 | SFM15881.1 | SAMN05444423_101343 | SAMN05444423_10239 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.947 |
LytC_1 | SFN62120.1 | SAMN05444423_101343 | SAMN05444423_11156 | N-acetylmuramoyl-L-alanine amidase. | Protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA. | 0.657 |
LytC_1 | SFN76270.1 | SAMN05444423_101343 | SAMN05444423_11337 | N-acetylmuramoyl-L-alanine amidase. | DNA-binding transcriptional regulator of glucitol operon. | 0.657 |
LytC_1 | murA | SAMN05444423_101343 | SAMN05444423_1031 | N-acetylmuramoyl-L-alanine amidase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.837 |
LytC_1 | trxA | SAMN05444423_101343 | SAMN05444423_101344 | N-acetylmuramoyl-L-alanine amidase. | Thioredoxin; Belongs to the thioredoxin family. | 0.619 |
LytC_2 | LytB | SAMN05444423_107188 | SAMN05444423_101197 | N-acetylmuramoyl-L-alanine amidase. | SpoIID/LytB domain protein. | 0.421 |
LytC_2 | LytC_1 | SAMN05444423_107188 | SAMN05444423_101343 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.947 |
LytC_2 | RipA_1 | SAMN05444423_107188 | SAMN05444423_10875 | N-acetylmuramoyl-L-alanine amidase. | Cell wall-associated hydrolase, NlpC family. | 0.549 |
LytC_2 | SFL70530.1 | SAMN05444423_107188 | SAMN05444423_101604 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.501 |
LytC_2 | SFM15881.1 | SAMN05444423_107188 | SAMN05444423_10239 | N-acetylmuramoyl-L-alanine amidase. | N-acetylmuramoyl-L-alanine amidase. | 0.912 |
RipA_1 | LytC_1 | SAMN05444423_10875 | SAMN05444423_101343 | Cell wall-associated hydrolase, NlpC family. | N-acetylmuramoyl-L-alanine amidase. | 0.618 |
RipA_1 | LytC_2 | SAMN05444423_10875 | SAMN05444423_107188 | Cell wall-associated hydrolase, NlpC family. | N-acetylmuramoyl-L-alanine amidase. | 0.549 |
RipA_1 | SFL70530.1 | SAMN05444423_10875 | SAMN05444423_101604 | Cell wall-associated hydrolase, NlpC family. | N-acetylmuramoyl-L-alanine amidase. | 0.470 |
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