Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
FrdB | SFL65627.1 | SAMN05444423_101426 | SAMN05444423_101428 | Succinate dehydrogenase subunit B. | Hypothetical protein. | 0.985 |
FrdB | SdhA_1 | SAMN05444423_101426 | SAMN05444423_101427 | Succinate dehydrogenase subunit B. | Succinate dehydrogenase / fumarate reductase flavoprotein subunit. | 0.999 |
FrdB | fum | SAMN05444423_101426 | SAMN05444423_10985 | Succinate dehydrogenase subunit B. | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.987 |
FrdB | fumC | SAMN05444423_101426 | SAMN05444423_1011429 | Succinate dehydrogenase subunit B. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.955 |
FrdB | sdhA | SAMN05444423_101426 | SAMN05444423_103156 | Succinate dehydrogenase subunit B. | Succinate dehydrogenase subunit A. | 0.994 |
FrdB | sdhB | SAMN05444423_101426 | SAMN05444423_103157 | Succinate dehydrogenase subunit B. | Succinate dehydrogenase subunit B. | 0.913 |
FrdB | sdhC | SAMN05444423_101426 | SAMN05444423_103154 | Succinate dehydrogenase subunit B. | Succinate dehydrogenase subunit C. | 0.998 |
FrdB | sdhD | SAMN05444423_101426 | SAMN05444423_103155 | Succinate dehydrogenase subunit B. | Succinate dehydrogenase subunit D. | 0.993 |
FrdB | sucC | SAMN05444423_101426 | SAMN05444423_1011203 | Succinate dehydrogenase subunit B. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.987 |
FrdB | sucD | SAMN05444423_101426 | SAMN05444423_1011204 | Succinate dehydrogenase subunit B. | succinyl-CoA synthetase (ADP-forming) alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.982 |
SFL65627.1 | FrdB | SAMN05444423_101428 | SAMN05444423_101426 | Hypothetical protein. | Succinate dehydrogenase subunit B. | 0.985 |
SFL65627.1 | SdhA_1 | SAMN05444423_101428 | SAMN05444423_101427 | Hypothetical protein. | Succinate dehydrogenase / fumarate reductase flavoprotein subunit. | 0.964 |
SFL65627.1 | sdhA | SAMN05444423_101428 | SAMN05444423_103156 | Hypothetical protein. | Succinate dehydrogenase subunit A. | 0.545 |
SFL65627.1 | sdhB | SAMN05444423_101428 | SAMN05444423_103157 | Hypothetical protein. | Succinate dehydrogenase subunit B. | 0.803 |
SFL65627.1 | sdhC | SAMN05444423_101428 | SAMN05444423_103154 | Hypothetical protein. | Succinate dehydrogenase subunit C. | 0.410 |
SFL65627.1 | sdhD | SAMN05444423_101428 | SAMN05444423_103155 | Hypothetical protein. | Succinate dehydrogenase subunit D. | 0.408 |
SdhA_1 | FrdB | SAMN05444423_101427 | SAMN05444423_101426 | Succinate dehydrogenase / fumarate reductase flavoprotein subunit. | Succinate dehydrogenase subunit B. | 0.999 |
SdhA_1 | SFL65627.1 | SAMN05444423_101427 | SAMN05444423_101428 | Succinate dehydrogenase / fumarate reductase flavoprotein subunit. | Hypothetical protein. | 0.964 |
SdhA_1 | fum | SAMN05444423_101427 | SAMN05444423_10985 | Succinate dehydrogenase / fumarate reductase flavoprotein subunit. | Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. | 0.979 |
SdhA_1 | fumC | SAMN05444423_101427 | SAMN05444423_1011429 | Succinate dehydrogenase / fumarate reductase flavoprotein subunit. | Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.961 |
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