STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL68817.1Putative zinc-finger. (232 aa)    
Predicted Functional Partners:
sigL
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.998
SigC
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.969
SFL82971.1
Geranylgeranyl reductase family.
   
  
 0.690
SFL68880.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.578
YusO
DNA-binding transcriptional regulator, MarR family.
  
  
 0.526
SigK_1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.470
sigK
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.470
CnrH
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.443
sigD
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.429
sigD-2
RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.429
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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