Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MerA_2 | TlpA | SAMN05444423_1011260 | SAMN05444423_1017 | Dihydrolipoamide dehydrogenase. | Thiol-disulfide isomerase or thioredoxin. | 0.640 |
MerA_2 | msrA | SAMN05444423_1011260 | SAMN05444423_111102 | Dihydrolipoamide dehydrogenase. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.476 |
MerA_2 | resA | SAMN05444423_1011260 | SAMN05444423_1011022 | Dihydrolipoamide dehydrogenase. | Thiol-disulfide isomerase or thioredoxin. | 0.644 |
MerA_3 | TlpA | SAMN05444423_1011183 | SAMN05444423_1017 | Dihydrolipoamide dehydrogenase. | Thiol-disulfide isomerase or thioredoxin. | 0.640 |
MerA_3 | msrA | SAMN05444423_1011183 | SAMN05444423_111102 | Dihydrolipoamide dehydrogenase. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.450 |
MerA_3 | resA | SAMN05444423_1011183 | SAMN05444423_1011022 | Dihydrolipoamide dehydrogenase. | Thiol-disulfide isomerase or thioredoxin. | 0.644 |
SFL53180.1 | SFL53205.1 | SAMN05444423_1015 | SAMN05444423_1016 | Colicin V production protein. | NUDIX domain-containing protein. | 0.860 |
SFL53180.1 | SFL53286.1 | SAMN05444423_1015 | SAMN05444423_1019 | Colicin V production protein. | Hypothetical protein. | 0.681 |
SFL53180.1 | TlpA | SAMN05444423_1015 | SAMN05444423_1017 | Colicin V production protein. | Thiol-disulfide isomerase or thioredoxin. | 0.798 |
SFL53180.1 | nth | SAMN05444423_1015 | SAMN05444423_1018 | Colicin V production protein. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.771 |
SFL53205.1 | SFL53180.1 | SAMN05444423_1016 | SAMN05444423_1015 | NUDIX domain-containing protein. | Colicin V production protein. | 0.860 |
SFL53205.1 | SFL53286.1 | SAMN05444423_1016 | SAMN05444423_1019 | NUDIX domain-containing protein. | Hypothetical protein. | 0.700 |
SFL53205.1 | TlpA | SAMN05444423_1016 | SAMN05444423_1017 | NUDIX domain-containing protein. | Thiol-disulfide isomerase or thioredoxin. | 0.971 |
SFL53205.1 | nth | SAMN05444423_1016 | SAMN05444423_1018 | NUDIX domain-containing protein. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.936 |
SFL53205.1 | resA | SAMN05444423_1016 | SAMN05444423_1011022 | NUDIX domain-containing protein. | Thiol-disulfide isomerase or thioredoxin. | 0.405 |
SFL53286.1 | SFL53180.1 | SAMN05444423_1019 | SAMN05444423_1015 | Hypothetical protein. | Colicin V production protein. | 0.681 |
SFL53286.1 | SFL53205.1 | SAMN05444423_1019 | SAMN05444423_1016 | Hypothetical protein. | NUDIX domain-containing protein. | 0.700 |
SFL53286.1 | TlpA | SAMN05444423_1019 | SAMN05444423_1017 | Hypothetical protein. | Thiol-disulfide isomerase or thioredoxin. | 0.754 |
SFL53286.1 | nth | SAMN05444423_1019 | SAMN05444423_1018 | Hypothetical protein. | DNA-(apurinic or apyrimidinic site) lyase; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.730 |
TlpA | MerA_2 | SAMN05444423_1017 | SAMN05444423_1011260 | Thiol-disulfide isomerase or thioredoxin. | Dihydrolipoamide dehydrogenase. | 0.640 |
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