STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fgd1_2Putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. (363 aa)    
Predicted Functional Partners:
SsuE_1
FMN reductase.
 
 0.995
YceI_1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
  
  
 0.720
cofE
Coenzyme F420-0 gamma-glutamyl ligase; Bifunctional enzyme that catalyzes the GTP-dependent successive addition of two or more gamma-linked L-glutamates to the L- lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives, and the FMNH2- dependent reduction of dehydro-F420-0 to form F420-0.
  
  
 0.585
nagD
NagD protein; Belongs to the HAD-like hydrolase superfamily.
       0.556
cofD
LPPG:FO 2-phospho-L-lactate transferase; Catalyzes the transfer of the phosphoenolpyruvate moiety from enoylpyruvoyl-2-diphospho-5'-guanosine (EPPG) to 7,8-didemethyl-8- hydroxy-5-deazariboflavin (FO) with the formation of dehydro coenzyme F420-0 and GMP.
     
 0.545
Ddn_6
Deazaflavin-dependent oxidoreductase, nitroreductase family.
      
 0.537
Ddn_4
Deazaflavin-dependent oxidoreductase, nitroreductase family.
      
 0.537
Ddn_7
Deazaflavin-dependent oxidoreductase, nitroreductase family.
      
 0.537
Ddn_3
Deazaflavin-dependent oxidoreductase, nitroreductase family.
      
 0.531
Ddn_1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
      
 0.510
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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