STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YvoA_1Transcriptional regulator, GntR family. (254 aa)    
Predicted Functional Partners:
SdhA_3
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
    0.972
SFM17807.1
4Fe-4S dicluster domain-containing protein.
 
     0.944
SsuA_5
NitT/TauT family transport system substrate-binding protein.
     0.941
CmpB_2
NitT/TauT family transport system permease protein.
 
    0.854
SsuB_5
NitT/TauT family transport system ATP-binding protein.
    0.797
LutR_2
DNA-binding transcriptional regulator, FadR family.
  
  
 0.764
YurK
Transcriptional regulator, GntR family.
  
     0.730
PdhR_2
Transcriptional regulator, GntR family.
  
  
 0.708
YvoA_2
Transcriptional regulator, GntR family.
  
     0.672
PdhR_1
Transcriptional regulator, GntR family.
  
  
 0.644
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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