STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AcnR_5Transcriptional regulator, TetR family. (205 aa)    
Predicted Functional Partners:
CaiD_9
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
     0.642
ligA
DNA ligase (NAD+); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.623
SFL75229.1
Protein of unknown function.
 
     0.577
FabG_18
3-oxoacyl-[acyl-carrier protein] reductase.
       0.563
fadE-5
acyl-CoA dehydrogenase.
       0.563
SFM72683.1
Transcriptional regulator, TetR family.
  
    0.527
MsrR_1
Transcriptional attenuator, LytR family.
   
    0.476
YurK
Transcriptional regulator, GntR family.
   
    0.476
FadR_2
Transcriptional regulator, TetR family.
  
    0.458
CysL
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
   
   0.457
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.