STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM34054.1Von Willebrand factor type A domain-containing protein. (429 aa)    
Predicted Functional Partners:
SFM34028.1
FHA domain-containing protein.
 
   
 0.956
pknG-2
Serine/threonine-protein kinase PknG.
 
    0.952
Stp_13
Serine/threonine protein phosphatase PrpC.
 
     0.932
SFM34182.1
Hypothetical protein.
 
     0.930
Peb1A
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
     0.854
SFM34137.1
Hypothetical protein.
       0.806
pknG
Serine/threonine-protein kinase PknG.
 
    0.784
SFM33999.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.664
SFL74829.1
Hypothetical protein.
 
     0.656
BchI
Magnesium chelatase subunit D.
  
 
 0.482
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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