STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RhaS_3Transcriptional regulator, AraC family. (321 aa)    
Predicted Functional Partners:
Btr_1
AraC-type DNA-binding protein.
  
   
 0.591
FeaR_2
Transcriptional regulator, AraC family.
 
    
0.585
TetD
Transcriptional regulator, AraC family.
  
     0.558
AraC_1
Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.548
Btr_4
Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.544
RipA_2
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.495
SFM53717.1
Aliphatic nitrilase.
 
     0.489
Btr_3
Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.486
SoxS_1
Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.482
RhaS_6
Transcriptional regulator, AraC family with amidase-like domain.
 
 
 0.476
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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