STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadD-5Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II. (547 aa)    
Predicted Functional Partners:
EchA8_3
Short chain enoyl-CoA hydratase.
 
 
 0.921
SFM63813.1
Acetyl-CoA acetyltransferase.
 
 
 0.874
SFM63839.1
acetyl-CoA C-acetyltransferase.
 
 
 0.829
DhbF_5
HxxPF-repeated domain-containing protein.
 
 
 0.819
SFM63786.1
Hypothetical protein.
 
  
 0.810
SFN69485.1
Hypothetical protein.
 
  
 0.770
SFN69446.1
Hypothetical protein.
 
  
 0.769
SFN69408.1
MaoC like domain-containing protein.
 
   
 0.768
KstR_1
Transcriptional regulator, TetR family.
 
   
 0.729
DhbF_9
Amino acid adenylation domain-containing protein.
 
 
0.713
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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