STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lvr_13-oxoacyl-[acyl-carrier protein] reductase. (265 aa)    
Predicted Functional Partners:
CaiA_2
Acyl-CoA dehydrogenase.
 0.985
fas1
Fatty acid synthase, bacterial type.
  
 0.971
SFM64527.1
Hypothetical protein.
 0.966
GctA
Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
 
  
 0.941
CaiA_1
Hypothetical protein.
 
 0.941
SFN68990.1
Acyl dehydratase.
 0.938
CatJ
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
 
 
 0.935
fabF-3
3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 0.929
CaiD_2
enoyl-CoA hydratase.
 
 0.879
MenB_3
enoyl-CoA hydratase.
 
 0.869
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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