STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFN02729.1Stage II sporulation protein E (SpoIIE). (146 aa)    
Predicted Functional Partners:
PdhB
2-oxoisovalerate dehydrogenase E1 component.
  
 0.935
RsmB
16S rRNA (cytosine967-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.808
pknB-2
Serine/threonine protein kinase.
  
 
 0.760
pknL
Serine/threonine protein kinase.
  
 
 0.760
PotA_1
Inner membrane component of T3SS domain-containing protein.
  
 
 0.661
SFN02762.1
Hypothetical protein.
     
 0.651
SFN43122.1
PAS domain S-box-containing protein.
  
 
 0.636
bkdG
Pyruvate dehydrogenase E1 component beta subunit.
   
 0.588
Fmt_2
methionyl-tRNA formyltransferase.
  
   0.584
Fmt_1
Formyl transferase.
  
   0.584
Your Current Organism:
Nocardia asteroides
NCBI taxonomy Id: 1824
Other names: ATCC 19247, Actinomyces asteroides, Actinomyces eppinger, Actinomyces eppingeri, Asteroides asteroides, CCM 2754, CCUG 10073, CIP 104503, Cladothrix asteroides, DSM 43373, DSM 43757, Discomyces asteroides, IFO 15531, IMET 7547, JCM 3384, N. asteroides, NBRC 15531, NCTC 11293, NRRL B-3828, Oospora asteroides, Proactinomyces asteroides, Streptothrix eppingerii, Streptotrix asteroides
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